Phylogeny and estimated genetic divergence times of banana cultivars (Musa spp.) from Java Island by maturase K (matK) genes

The size of PCR-amplified matK ranged from 844 to 860 bp and showed a high variability. The haplotype diversity was 0.9048 with nine haplotypes. Haplotype distribution map revealed the lineage patterns of banana cultivars from Java. Reconstruction of genetic relationships using the maximum likelihoo...

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Tác giả chính:	Probojati, Rasyadan T.
Đồng tác giả:	Listyorini, Dwi
Định dạng:	BB
Ngôn ngữ:	en_US
Thông tin xuất bản:	2023
Chủ đề:	Banana phylogeny Banana divergence times Banana genetic diversity MatK gene Banana in Java Island
Truy cập trực tuyến:	http://tailieuso.tlu.edu.vn/handle/DHTL/12359
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spelling	oai:localhost:DHTL-123592023-03-15T08:27:30Z Phylogeny and estimated genetic divergence times of banana cultivars (Musa spp.) from Java Island by maturase K (matK) genes Probojati, Rasyadan T. Listyorini, Dwi Sulisetijono, Sulisetijono Wahyudi, Didik Banana phylogeny Banana divergence times Banana genetic diversity MatK gene Banana in Java Island The size of PCR-amplified matK ranged from 844 to 860 bp and showed a high variability. The haplotype diversity was 0.9048 with nine haplotypes. Haplotype distribution map revealed the lineage patterns of banana cultivars from Java. Reconstruction of genetic relationships using the maximum likelihood, maximum parsimony and Bayesian inference algorithms produces tree topologies and classifications that are grouped according to their genomic groups, into three main clades, i.e., AA/AAA, AAB and ABB. Based on the previously derived age constraints and fossil data, we estimate (Musaceae) that genetic divergence times of all samples occurred during the Eocene (95% HPD: 51.9 Mya), Musa acuminata group (AA, AAA, AAB) with Musa balbisiana group (BB and ABB) occurred during the Oligocene (95% HPD: 26 Mya), and the separation on each banana cultivars occurred during the Middle Miocene to Pliocene (95% HPD: 16.5–2.5 Mya). https://link.springer.com/article/10.1186/s42269-021-00492-3 2023-03-15T08:27:30Z 2023-03-15T08:27:30Z 2021 BB 2522-8307 http://tailieuso.tlu.edu.vn/handle/DHTL/12359 en_US Bulletin of the National Research Centre, Volume 45 (2021), Article number: 33
institution	Trường Đại học Thủy Lợi
collection	DSpace
language	en_US
topic	Banana phylogeny Banana divergence times Banana genetic diversity MatK gene Banana in Java Island
spellingShingle	Banana phylogeny Banana divergence times Banana genetic diversity MatK gene Banana in Java Island Probojati, Rasyadan T. Phylogeny and estimated genetic divergence times of banana cultivars (Musa spp.) from Java Island by maturase K (matK) genes
description	The size of PCR-amplified matK ranged from 844 to 860 bp and showed a high variability. The haplotype diversity was 0.9048 with nine haplotypes. Haplotype distribution map revealed the lineage patterns of banana cultivars from Java. Reconstruction of genetic relationships using the maximum likelihood, maximum parsimony and Bayesian inference algorithms produces tree topologies and classifications that are grouped according to their genomic groups, into three main clades, i.e., AA/AAA, AAB and ABB. Based on the previously derived age constraints and fossil data, we estimate (Musaceae) that genetic divergence times of all samples occurred during the Eocene (95% HPD: 51.9 Mya), Musa acuminata group (AA, AAA, AAB) with Musa balbisiana group (BB and ABB) occurred during the Oligocene (95% HPD: 26 Mya), and the separation on each banana cultivars occurred during the Middle Miocene to Pliocene (95% HPD: 16.5–2.5 Mya).
author2	Listyorini, Dwi
author_facet	Listyorini, Dwi Probojati, Rasyadan T.
format	BB
author	Probojati, Rasyadan T.
author_sort	Probojati, Rasyadan T.
title	Phylogeny and estimated genetic divergence times of banana cultivars (Musa spp.) from Java Island by maturase K (matK) genes
title_short	Phylogeny and estimated genetic divergence times of banana cultivars (Musa spp.) from Java Island by maturase K (matK) genes
title_full	Phylogeny and estimated genetic divergence times of banana cultivars (Musa spp.) from Java Island by maturase K (matK) genes
title_fullStr	Phylogeny and estimated genetic divergence times of banana cultivars (Musa spp.) from Java Island by maturase K (matK) genes
title_full_unstemmed	Phylogeny and estimated genetic divergence times of banana cultivars (Musa spp.) from Java Island by maturase K (matK) genes
title_sort	phylogeny and estimated genetic divergence times of banana cultivars (musa spp.) from java island by maturase k (matk) genes
publishDate	2023
url	http://tailieuso.tlu.edu.vn/handle/DHTL/12359
work_keys_str_mv	AT probojatirasyadant phylogenyandestimatedgeneticdivergencetimesofbananacultivarsmusasppfromjavaislandbymaturasekmatkgenes
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Phylogeny and estimated genetic divergence times of banana cultivars (Musa spp.) from Java Island by maturase K (matK) genes

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